⚡ Promptolis Original · Healthcare & Medical
🔬 Clinical Research Protocol Framework — Ethical + Rigorous Study Design
The structured clinical research protocol covering IRB requirements, study design selection, power calculations, data collection, ethical considerations, and the publication-ready framework from hypothesis to dissemination.
Why this is epic
Most clinical research starts without proper protocol = waste + ethical issues. This Original produces structured protocol framework.
Names 5 protocol failures (unclear hypothesis, inadequate power, no IRB engagement, poor data collection, missing dissemination plan).
Produces complete framework. NOT medical research advice — requires IRB + research methodology expertise.
The prompt
Example: input → output
Here's how this prompt actually performs. Real input below, real output from Claude Opus 4.
<research-question>Does early mobilization after abdominal surgery reduce postoperative ileus rates?</research-question> <study-type>Quality improvement project with possibility of formal study.</study-type> <population>Adult patients undergoing elective abdominal surgery at our institution.</population> <intervention>Structured early mobilization protocol (day 1 post-op, progressive).</intervention> <outcomes>Primary: postoperative ileus rate. Secondary: length of stay, readmission, patient satisfaction, complications.</outcomes> <resources>Surgery resident leading. Attending mentor. Institutional data access.</resources> <institutional-context>Academic medical center. IRB exempt or expedited review expected for QI.</institutional-context> <timeline>9-month project with publication goal.</timeline>
Research Protocol: Early Mobilization + Postoperative Ileus — QI Project
A clinical research protocol produces rigorous design for ethical + useful research. NOT research advice — requires methodology + IRB expertise. This structure: QI protocol with publication potential.
Research Question + Hypothesis
Primary research question:
Does implementation of a structured early mobilization protocol reduce the rate of postoperative ileus in adult patients undergoing elective abdominal surgery?
Hypothesis:
- Null (H0): Early mobilization does not affect ileus rate.
- Alternative (H1): Early mobilization reduces ileus rate by 25% or more.
Expected direction: early mobilization → reduced ileus.
Literature support:
- Multiple studies suggest early ambulation reduces ileus
- Mechanism: GI motility stimulation, reduced inflammation
- Inconsistent implementation in practice
Study Design
Pre-Post Intervention Study (Quality Improvement):
Design rationale:
- QI project uses pre-intervention vs. post-intervention comparison
- Historical control (pre-protocol patients) vs. protocol cohort
- Institutional data access facilitates retrospective baseline
- Not RCT (QI, not formal trial)
Phases:
Phase 1: Baseline (3 months)
- Retrospective chart review of historical cohort
- Establish current ileus rate baseline
- Identify confounders to track
Phase 2: Protocol Implementation (1 month)
- Staff training
- Protocol rollout
- Run-in period (exclude first 2 weeks)
Phase 3: Data Collection (4 months)
- Prospective data on intervention cohort
- Primary outcome tracking
- Secondary outcomes
Phase 4: Analysis + Dissemination (1 month)
- Data analysis
- Internal reporting
- Publication preparation
Population + Sample Size
Inclusion Criteria
- Adult (18+) patients
- Elective abdominal surgery (specific types)
- At our institution
- During study period
Exclusion Criteria
- Emergency surgery
- Pre-existing ileus
- Patients unable to ambulate (cognitive, mobility issues)
- ICU admission post-op
- Specific procedures not amenable to early mobilization
Sample Size Calculation
Inputs:
- Baseline ileus rate (from literature): 15%
- Expected reduction: 25% relative (to 11%)
- Alpha: 0.05 (two-tailed)
- Power: 0.80
Calculation (two-proportion test):
- Required sample per group: ~900 patients
- Total: ~1,800 patients
Practical considerations:
- Our institution does ~600-800 elective abdominal surgeries annually
- 9-month data collection = ~400-500 intervention patients
- Historical baseline: 1-2 years = ~800-1,000 patients
Revised sample size: may be underpowered for primary outcome with 25% reduction. Consider:
- Smaller effect size (15% reduction) — requires even larger sample
- Longer study period
- Multi-site collaboration
- Accept underpower + report honestly
Decision: proceed with 9-month timeline + acknowledge power limitation. Primary finding may be non-significant — still valuable QI data.
Data Collection
Data Sources
- EHR (Epic) data extraction
- Operative notes
- Daily progress notes
- Nursing documentation
- Discharge summaries
Data Elements
Primary outcome:
- Postoperative ileus defined as: absence of bowel movement + tolerance of oral diet by POD 3 (or other standardized definition)
Secondary outcomes:
- Length of stay (hours)
- 30-day readmission
- Patient satisfaction (if available)
- Other complications (SSI, DVT, etc.)
Predictor variable:
- Mobilization protocol compliance (documented ambulation on POD 0 + POD 1)
Covariates (potential confounders):
- Age
- Gender
- BMI
- Comorbidities (diabetes, prior surgery, etc.)
- Procedure type + duration
- Surgical approach (open vs. laparoscopic)
- Anesthesia duration
- Analgesia regimen (epidural, opioids, multimodal)
- Nausea management
- IV fluid volume
- Bowel preparation
Data Collection Tools
Standardized data abstraction form:
- Patient demographics
- Surgery details
- Outcome measurements
- Protocol compliance
- Complications
REDCap database (secure, IRB-approved).
Pilot data collection: 20 patients to verify tool + identify issues before full rollout.
Data Quality
- Double data entry for 10%+ of records
- Missing data management plan
- Outlier identification + handling
- Regular quality checks
Ethical Considerations + IRB
IRB Submission
Project type: Quality Improvement
IRB determination likely:
- Exempt (if purely QI) or
- Expedited review (if research component)
Institution determines classification.
Required Elements for IRB
Protocol document:
- Background + significance
- Research question + hypothesis
- Study design + population
- Methods + outcomes
- Sample size calculation
- Data collection + analysis plan
- Ethical considerations
- Investigator roles
Consent considerations:
- If exempt/QI: waiver of consent
- If research: appropriate consent process
- Patient notification of QI activities
Privacy + confidentiality:
- HIPAA compliance
- De-identified data
- Secure storage (REDCap or approved system)
- Data access limited
Ethical Principles
Beneficence: protocol benefits patients (potentially).
Non-maleficence: minimal risk (early mobilization standard care).
Autonomy: patients can opt out of protocol if desired.
Justice: fair access across patient populations.
Potential Risks
- Theoretical: postoperative complications from early mobilization
- Mitigation: standard mobilization criteria, nursing oversight
- Safety monitoring: any adverse events reported
Vulnerable Populations
- Elderly patients: equal access with safety precautions
- Non-English speaking: interpreter services
- Pain or cognitive issues: individual assessment
Analysis Plan
Descriptive Statistics
- Patient demographics
- Surgery details
- Outcome rates
- Group comparisons
Primary Analysis
Compare ileus rates:
- Historical baseline vs. intervention cohort
- Chi-square test
- Adjusted analysis (multiple logistic regression)
- Control for known confounders
Secondary Analyses
- Length of stay: Wilcoxon rank-sum test + adjusted analysis
- Readmission: logistic regression
- Complications: chi-square + Fisher's exact for rare
- Subgroup analyses: pre-specified (open vs. laparoscopic, etc.)
Statistical Software
- R or SPSS (institutional access)
- Consultation with biostatistician recommended
Handling Missing Data
- Complete case analysis primary
- Sensitivity analysis with multiple imputation
- Transparency about missing data
Publication Plan
Target Journals
Primary targets:
- Journal of Hospital Medicine
- Annals of Surgery
- BMJ Quality & Safety
- American Journal of Surgery
Considerations:
- QI journal vs. clinical journal
- Impact factor
- Readership match
- Open access vs. traditional
Publication Requirements
CONSORT guidelines (if RCT): not primary given QI design.
STROBE guidelines: for observational design.
SQUIRE guidelines: for QI reporting.
Use SQUIRE as primary framework given QI nature.
Authorship
- Resident: first author
- Attending mentor: senior author
- Statistician if involved
- Key collaborators (nursing, surgery leadership)
Authorship criteria: ICMJE standards (substantial contributions, drafting, approval, accountability).
Dissemination Plan
- Institutional: department grand rounds
- Regional: local surgical society
- National: abstract submission to SAGES, ACS
- Journal publication
- Patient-facing: hospital newsletter
Timeline + Milestones
Month 1-3 (Baseline + Preparation)
- Protocol drafting
- IRB submission + approval
- Baseline data collection
- Staff training materials
- Pilot data collection
Month 4 (Protocol Implementation)
- Staff training sessions
- Protocol go-live
- Initial monitoring
- Address implementation issues
Month 5-8 (Data Collection)
- Prospective data collection
- Weekly audits
- Interim data review
- Adjustments as needed
Month 9 (Analysis + Dissemination)
- Statistical analysis
- Manuscript drafting
- Institutional presentation
- Conference abstract submission
- Journal submission
Key Takeaways
- Pre-post QI design with historical baseline + prospective intervention cohort. 9-month timeline. Sample size may be underpowered for 25% reduction but still valuable.
- IRB early engagement: QI determination (exempt vs. expedited). Consent waiver likely. HIPAA compliance + secure data handling throughout.
- Data collection via REDCap with standardized tools, pilot testing, quality control. Covariates captured for adjusted analysis.
- Analysis plan: primary (chi-square + logistic regression adjusted), secondary outcomes, subgroup analyses. Biostatistician consultation recommended.
- Publication plan from start: SQUIRE guidelines for QI, target journals identified, authorship criteria clear, dissemination across institutional + regional + national venues.
Common use cases
- Residents proposing QI project
- Clinical researchers designing studies
- Academic medical centers
- Pharmaceutical trials
- Community-based research
Best AI model for this
Claude Opus 4 or Sonnet 4.5. Clinical research requires methodology + ethics + statistics. NOT medical advice.
Pro tips
- NOT research advice. IRB + methodologists required.
- Hypothesis FIRST, then design.
- Power calculation mandatory.
- IRB early (not after design complete).
- Data collection piloted.
- Protocol deviations documented.
- Publication plan from start.
- Data sharing per guidelines.
Customization tips
- Involve biostatistician EARLY. Not after data collection — in design.
- IRB approval before ANY data collection. Retroactive approval problematic.
- Protocol deviations happen — document + address.
- Pilot data collection prevents major problems.
- Publication plan prevents 'we did research + never published' waste.
Variants
QI Project
Quality improvement research.
Observational Study
Non-interventional research.
Randomized Trial
Intervention studies.
Systematic Review
Literature synthesis.
Frequently asked questions
How do I use the Clinical Research Protocol Framework — Ethical + Rigorous Study Design prompt?
Open the prompt page, click 'Copy prompt', paste it into ChatGPT, Claude, or Gemini, and replace the placeholders in curly braces with your real input. The prompt is also launchable directly in each model with one click.
Which AI model works best with Clinical Research Protocol Framework — Ethical + Rigorous Study Design?
Claude Opus 4 or Sonnet 4.5. Clinical research requires methodology + ethics + statistics. NOT medical advice.
Can I customize the Clinical Research Protocol Framework — Ethical + Rigorous Study Design prompt for my use case?
Yes — every Promptolis Original is designed to be customized. Key levers: NOT research advice. IRB + methodologists required.; Hypothesis FIRST, then design.
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