⚡ Promptolis Original · Healthcare & Medical

🔬 Clinical Research Protocol Framework — Ethical + Rigorous Study Design

The structured clinical research protocol covering IRB requirements, study design selection, power calculations, data collection, ethical considerations, and the publication-ready framework from hypothesis to dissemination.

⏱️ Ongoing protocol development 🤖 ~2 min in Claude 🗓️ Updated 2026-04-20

Why this is epic

Most clinical research starts without proper protocol = waste + ethical issues. This Original produces structured protocol framework.

Names 5 protocol failures (unclear hypothesis, inadequate power, no IRB engagement, poor data collection, missing dissemination plan).

Produces complete framework. NOT medical research advice — requires IRB + research methodology expertise.

The prompt

Promptolis Original · Copy-ready
<role> You are a clinical research methodology consultant with 15 years of experience. NOT providing medical research advice. You draw on CONSORT, STROBE, IRB requirements, FDA regulations (if applicable), research ethics frameworks. </role> <principles> 1. NOT research advice. 2. Hypothesis first. 3. Power calculation mandatory. 4. IRB early engagement. 5. Pilot data collection. 6. Protocol deviations documented. 7. Publication plan from start. 8. Data sharing per guidelines. </principles> <input> <research-question>{clinical question}</research-question> <study-type>{QI, observational, RCT}</study-type> <population>{patients of interest}</population> <intervention>{if applicable}</intervention> <outcomes>{primary + secondary}</outcomes> <resources>{team, funding}</resources> <institutional-context>{IRB, requirements}</institutional-context> <timeline>{realistic scope}</timeline> </input> <output-format> # Research Protocol: [Question] ## Research Question + Hypothesis ## Study Design ## Population + Sample Size ## Data Collection ## Ethical Considerations + IRB ## Analysis Plan ## Publication Plan ## Timeline + Milestones ## Key Takeaways 5 bullets. </output-format> <auto-intake> If input incomplete: ask for question, study type, population, intervention, outcomes, resources, institutional context, timeline. </auto-intake> Now, design:

Example: input → output

Here's how this prompt actually performs. Real input below, real output from Claude Opus 4.

📝 Input
<research-question>Does early mobilization after abdominal surgery reduce postoperative ileus rates?</research-question>
<study-type>Quality improvement project with possibility of formal study.</study-type>
<population>Adult patients undergoing elective abdominal surgery at our institution.</population>
<intervention>Structured early mobilization protocol (day 1 post-op, progressive).</intervention>
<outcomes>Primary: postoperative ileus rate. Secondary: length of stay, readmission, patient satisfaction, complications.</outcomes>
<resources>Surgery resident leading. Attending mentor. Institutional data access.</resources>
<institutional-context>Academic medical center. IRB exempt or expedited review expected for QI.</institutional-context>
<timeline>9-month project with publication goal.</timeline>
🤖 Output

Research Protocol: Early Mobilization + Postoperative Ileus — QI Project

A clinical research protocol produces rigorous design for ethical + useful research. NOT research advice — requires methodology + IRB expertise. This structure: QI protocol with publication potential.

Research Question + Hypothesis

Primary research question:

Does implementation of a structured early mobilization protocol reduce the rate of postoperative ileus in adult patients undergoing elective abdominal surgery?

Hypothesis:

  • Null (H0): Early mobilization does not affect ileus rate.
  • Alternative (H1): Early mobilization reduces ileus rate by 25% or more.

Expected direction: early mobilization → reduced ileus.

Literature support:

  • Multiple studies suggest early ambulation reduces ileus
  • Mechanism: GI motility stimulation, reduced inflammation
  • Inconsistent implementation in practice

Study Design

Pre-Post Intervention Study (Quality Improvement):

Design rationale:

  • QI project uses pre-intervention vs. post-intervention comparison
  • Historical control (pre-protocol patients) vs. protocol cohort
  • Institutional data access facilitates retrospective baseline
  • Not RCT (QI, not formal trial)

Phases:

Phase 1: Baseline (3 months)
  • Retrospective chart review of historical cohort
  • Establish current ileus rate baseline
  • Identify confounders to track
Phase 2: Protocol Implementation (1 month)
  • Staff training
  • Protocol rollout
  • Run-in period (exclude first 2 weeks)
Phase 3: Data Collection (4 months)
  • Prospective data on intervention cohort
  • Primary outcome tracking
  • Secondary outcomes
Phase 4: Analysis + Dissemination (1 month)
  • Data analysis
  • Internal reporting
  • Publication preparation

Population + Sample Size

Inclusion Criteria
  • Adult (18+) patients
  • Elective abdominal surgery (specific types)
  • At our institution
  • During study period
Exclusion Criteria
  • Emergency surgery
  • Pre-existing ileus
  • Patients unable to ambulate (cognitive, mobility issues)
  • ICU admission post-op
  • Specific procedures not amenable to early mobilization
Sample Size Calculation

Inputs:

  • Baseline ileus rate (from literature): 15%
  • Expected reduction: 25% relative (to 11%)
  • Alpha: 0.05 (two-tailed)
  • Power: 0.80

Calculation (two-proportion test):

  • Required sample per group: ~900 patients
  • Total: ~1,800 patients

Practical considerations:

  • Our institution does ~600-800 elective abdominal surgeries annually
  • 9-month data collection = ~400-500 intervention patients
  • Historical baseline: 1-2 years = ~800-1,000 patients

Revised sample size: may be underpowered for primary outcome with 25% reduction. Consider:

  • Smaller effect size (15% reduction) — requires even larger sample
  • Longer study period
  • Multi-site collaboration
  • Accept underpower + report honestly

Decision: proceed with 9-month timeline + acknowledge power limitation. Primary finding may be non-significant — still valuable QI data.

Data Collection

Data Sources
  • EHR (Epic) data extraction
  • Operative notes
  • Daily progress notes
  • Nursing documentation
  • Discharge summaries
Data Elements

Primary outcome:

  • Postoperative ileus defined as: absence of bowel movement + tolerance of oral diet by POD 3 (or other standardized definition)

Secondary outcomes:

  • Length of stay (hours)
  • 30-day readmission
  • Patient satisfaction (if available)
  • Other complications (SSI, DVT, etc.)

Predictor variable:

  • Mobilization protocol compliance (documented ambulation on POD 0 + POD 1)

Covariates (potential confounders):

  • Age
  • Gender
  • BMI
  • Comorbidities (diabetes, prior surgery, etc.)
  • Procedure type + duration
  • Surgical approach (open vs. laparoscopic)
  • Anesthesia duration
  • Analgesia regimen (epidural, opioids, multimodal)
  • Nausea management
  • IV fluid volume
  • Bowel preparation
Data Collection Tools

Standardized data abstraction form:

  • Patient demographics
  • Surgery details
  • Outcome measurements
  • Protocol compliance
  • Complications

REDCap database (secure, IRB-approved).

Pilot data collection: 20 patients to verify tool + identify issues before full rollout.

Data Quality
  • Double data entry for 10%+ of records
  • Missing data management plan
  • Outlier identification + handling
  • Regular quality checks

Ethical Considerations + IRB

IRB Submission

Project type: Quality Improvement

IRB determination likely:

  • Exempt (if purely QI) or
  • Expedited review (if research component)

Institution determines classification.

Required Elements for IRB

Protocol document:

  • Background + significance
  • Research question + hypothesis
  • Study design + population
  • Methods + outcomes
  • Sample size calculation
  • Data collection + analysis plan
  • Ethical considerations
  • Investigator roles

Consent considerations:

  • If exempt/QI: waiver of consent
  • If research: appropriate consent process
  • Patient notification of QI activities

Privacy + confidentiality:

  • HIPAA compliance
  • De-identified data
  • Secure storage (REDCap or approved system)
  • Data access limited
Ethical Principles

Beneficence: protocol benefits patients (potentially).

Non-maleficence: minimal risk (early mobilization standard care).

Autonomy: patients can opt out of protocol if desired.

Justice: fair access across patient populations.

Potential Risks
  • Theoretical: postoperative complications from early mobilization
  • Mitigation: standard mobilization criteria, nursing oversight
  • Safety monitoring: any adverse events reported
Vulnerable Populations
  • Elderly patients: equal access with safety precautions
  • Non-English speaking: interpreter services
  • Pain or cognitive issues: individual assessment

Analysis Plan

Descriptive Statistics
  • Patient demographics
  • Surgery details
  • Outcome rates
  • Group comparisons
Primary Analysis

Compare ileus rates:

  • Historical baseline vs. intervention cohort
  • Chi-square test
  • Adjusted analysis (multiple logistic regression)
  • Control for known confounders
Secondary Analyses
  • Length of stay: Wilcoxon rank-sum test + adjusted analysis
  • Readmission: logistic regression
  • Complications: chi-square + Fisher's exact for rare
  • Subgroup analyses: pre-specified (open vs. laparoscopic, etc.)
Statistical Software
  • R or SPSS (institutional access)
  • Consultation with biostatistician recommended
Handling Missing Data
  • Complete case analysis primary
  • Sensitivity analysis with multiple imputation
  • Transparency about missing data

Publication Plan

Target Journals

Primary targets:

  • Journal of Hospital Medicine
  • Annals of Surgery
  • BMJ Quality & Safety
  • American Journal of Surgery

Considerations:

  • QI journal vs. clinical journal
  • Impact factor
  • Readership match
  • Open access vs. traditional
Publication Requirements

CONSORT guidelines (if RCT): not primary given QI design.

STROBE guidelines: for observational design.

SQUIRE guidelines: for QI reporting.

Use SQUIRE as primary framework given QI nature.

Authorship
  • Resident: first author
  • Attending mentor: senior author
  • Statistician if involved
  • Key collaborators (nursing, surgery leadership)

Authorship criteria: ICMJE standards (substantial contributions, drafting, approval, accountability).

Dissemination Plan
  • Institutional: department grand rounds
  • Regional: local surgical society
  • National: abstract submission to SAGES, ACS
  • Journal publication
  • Patient-facing: hospital newsletter

Timeline + Milestones

Month 1-3 (Baseline + Preparation)
  • Protocol drafting
  • IRB submission + approval
  • Baseline data collection
  • Staff training materials
  • Pilot data collection
Month 4 (Protocol Implementation)
  • Staff training sessions
  • Protocol go-live
  • Initial monitoring
  • Address implementation issues
Month 5-8 (Data Collection)
  • Prospective data collection
  • Weekly audits
  • Interim data review
  • Adjustments as needed
Month 9 (Analysis + Dissemination)
  • Statistical analysis
  • Manuscript drafting
  • Institutional presentation
  • Conference abstract submission
  • Journal submission

Key Takeaways

  • Pre-post QI design with historical baseline + prospective intervention cohort. 9-month timeline. Sample size may be underpowered for 25% reduction but still valuable.
  • IRB early engagement: QI determination (exempt vs. expedited). Consent waiver likely. HIPAA compliance + secure data handling throughout.
  • Data collection via REDCap with standardized tools, pilot testing, quality control. Covariates captured for adjusted analysis.
  • Analysis plan: primary (chi-square + logistic regression adjusted), secondary outcomes, subgroup analyses. Biostatistician consultation recommended.
  • Publication plan from start: SQUIRE guidelines for QI, target journals identified, authorship criteria clear, dissemination across institutional + regional + national venues.

Common use cases

  • Residents proposing QI project
  • Clinical researchers designing studies
  • Academic medical centers
  • Pharmaceutical trials
  • Community-based research

Best AI model for this

Claude Opus 4 or Sonnet 4.5. Clinical research requires methodology + ethics + statistics. NOT medical advice.

Pro tips

  • NOT research advice. IRB + methodologists required.
  • Hypothesis FIRST, then design.
  • Power calculation mandatory.
  • IRB early (not after design complete).
  • Data collection piloted.
  • Protocol deviations documented.
  • Publication plan from start.
  • Data sharing per guidelines.

Customization tips

  • Involve biostatistician EARLY. Not after data collection — in design.
  • IRB approval before ANY data collection. Retroactive approval problematic.
  • Protocol deviations happen — document + address.
  • Pilot data collection prevents major problems.
  • Publication plan prevents 'we did research + never published' waste.

Variants

QI Project

Quality improvement research.

Observational Study

Non-interventional research.

Randomized Trial

Intervention studies.

Systematic Review

Literature synthesis.

Frequently asked questions

How do I use the Clinical Research Protocol Framework — Ethical + Rigorous Study Design prompt?

Open the prompt page, click 'Copy prompt', paste it into ChatGPT, Claude, or Gemini, and replace the placeholders in curly braces with your real input. The prompt is also launchable directly in each model with one click.

Which AI model works best with Clinical Research Protocol Framework — Ethical + Rigorous Study Design?

Claude Opus 4 or Sonnet 4.5. Clinical research requires methodology + ethics + statistics. NOT medical advice.

Can I customize the Clinical Research Protocol Framework — Ethical + Rigorous Study Design prompt for my use case?

Yes — every Promptolis Original is designed to be customized. Key levers: NOT research advice. IRB + methodologists required.; Hypothesis FIRST, then design.

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